Bioedit,  Sequence alignment editor

MEGA, Molecular Evolutionary Genetics Analysis

Geneious, Bioinformatics Software for Sequence Data Analysis

Notepad++, text editor and source code editor

MAFFT, Multiple alignment program for amino acid or nucleotide sequences

RAxML – Randomized Axelerated Maximum Likelihood

BEAST, Bayesian analysis of molecular sequences

iTOL: Interactive Tree Of Life

Galaxy, open source, web-based platform for bioinformatics

The CIPRES Science Gateway, public resource for inference of large phylogenetic trees



NCBI, The National Center for Biotechnology Information

Influenza Research Database